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" DNA barcoding and molecular phylogeny "
/ edited by Subrata Trivedi... [et al.].
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Central Library of the Kurdistan University
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| Material Type
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Latin Book
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| Record Number
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217006
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| Doc. No
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6012
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| Language of Document
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English
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| Title & Author
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DNA barcoding and molecular phylogeny\ / edited by Subrata Trivedi... [et al.].
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| Publication Statement
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Cham, Switzerland: : Springer, , 2018.
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| Page. NO
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vii, 442 pages.: : illustrations, tables.
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| ISBN
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978-3-319-90679-9
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: 978-3-319-90680-5 (eBook)
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| Notes
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Editors: Subrata Trivedi, Hasibur Rehman, Shalini Saggu, Chellasamy Panneerselvam, Sankar K. Ghosh.
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| Bibliographies/Indexes
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Includes bibliographical references.
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| Contents
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Intro; Contents; Part I: DNA Barcoding: Advantages and Significance; DNA Barcoding Significance and Utilities; 1 DNA Barcoding: A Genetic Approach-Based Tool for Species Identification; 1.1 Significance: Biodiversity Assessment; 1.2 DNA Barcoding Pipeline; 2 Genetic and Genomic Approaches in DNA Barcoding; 2.1 DNA Barcoding with Gene Markers; 2.1.1 Gene Markers in Animal DNA Barcoding; 2.1.2 Gene Markers in Plant DNA Barcoding; 2.1.3 Gene Markers in Algal DNA Barcoding; 2.1.4 Gene Markers in Fungal DNA Barcoding; 2.1.5 Gene Markers in Protist DNA Barcoding 2.1.6 Gene Markers in Microbial DNA Barcoding2.2 DNA Metabarcoding with Genomics; 2.2.1 Metagenomics and NGS Technologies; 2.2.2 DNA Metabarcoding; 2.2.3 Extended DNA Barcode; 2.3 Alternative Next-Generation DNA Barcodes; 3 DNA Barcoding Informatics; 3.1 Reference Libraries; 3.2 DNA Barcode Databases; 3.2.1 BOLD; 3.2.2 NCBI; 3.3 DNA Barcoding Projects; 4 Standard Operating Procedures and Quality Assurance; 4.1 Standard Operating Procedures; 4.2 DNA Barcoding as Quality Control Test; 4.3 Quality Assurance; 4.3.1 Plant Samples; 5 DNA Barcoding Utilities; 5.1 Basic Utilities 5.1.1 Plant Biodiversity Assessment5.1.2 Animal Biodiversity Assessment; 5.1.3 Microbial Biodiversity Assessment; 5.2 Applied Utilities; 5.2.1 Environment Protection; 5.2.2 Health Protection; 5.2.3 Consumer Protection; 5.2.4 Forensics; 5.2.5 Biomedicine; 5.2.6 Agriculture Protection; 6 Conclusions; References; R in DNA Barcoding; 1 Introduction; 2 SeqinR; 3 Reading DNA Sequence Data; 4 Calculate the Length of a DNA Sequence; 5 Determination of Base Composition of a DNA Sequence; 6 Calculation of GC Content of DNA Sequence; 7 DNA Words; 8 Analyses of Phylogenetics and Evolution (APE) 9 Installation and Load of Package10 Reading the DNA Sequence Data; 11 Species Identity and Evolution in R (SPIDER); 12 BarcodingR; References; Implications and Utility of DNA Barcoding; 1 Introduction; 2 Significance of DNA Barcoding; 3 Gene Markers in DNA Barcoding; 4 Applications of DNA Barcoding; 4.1 DNA Barcoding in Biodiversity Assessments and Conservations; 4.1.1 DNA Barcoding on Bacteria; 4.1.2 DNA Barcoding on Fungi; 4.1.3 DNA Barcoding on Terrestrial Species; 4.1.4 DNA Barcoding on Freshwater Species; 4.1.5 DNA Barcoding of Marine Species; 4.2 Metabarcoding 4.3 Detection of Mislabelling and Food Piracy4.4 Controlling Agricultural Pest and Predators; 4.5 Identifying Disease Vectors and Parasites; 4.6 Identification of Medical Plants; 4.7 Monitoring Water Quality; 4.8 DNA Barcoding on Forensic Sciences and Conservation of Endangered Species; 5 Conclusion; References; ``Significance of DNA Barcoding in Avian Species: Tracing the History and Building the Future;́́ 1 Introduction; 2 Significance of DNA Barcoding in Aves; 3 Indexing the Ancient Biota; 4 The Present Scenario; 5 Limitations of DNA Barcoding; 5.1 Elimination of ``Barcode Gapś́.
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| Abstract
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This book includes a multitude of aspects of DNA barcoding and molecular phylogeny along with some case studies which will be beneficial to researchers and academics around the globe in a total of 27 chapters. Bioinformatics is an important part of DNA barcoding and the concept of R in DNA Barcoding is a very recent development. This book contains a full chapter devoted to this very important topic. Further areas where DNA barcoding can be applied are: management of invasive alien species, plant animal interactions, forensic botany, clinical microbiology especially in relation to infection management, DNA database management, among others. This book also includes very useful information related to the DNA barcoding and molecular phylogeny of microbes, aquatic plants, algae, mosquitoes, elasmobranchs, fishes, reptiles, birds and ruminant mammals. Some unique case studies describe DNA barcoding of reptiles dwelling in Saudi Arabian deserts, DNA barcoding of a high altitude medicinal plant, genetic variation studies in both wild and hatchery populations of Anabas testudineus, DNA Barcoding and molecular phylogeny of Ichthyoplankton and juvenile fishes of Kuantan River in Malaysia.
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| Subject
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DNA -- Analysis.
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Phylogeny -- Molecular aspects.
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| Subject
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Genetic markers.
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| Added Entry
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EditorSubrata, Trivedi,
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| publication status
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e
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| Keyword
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Genetic markers.DNA.Phylogeny.
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